Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs73360612 chr7:64254730 C/A 9.41E-5 502 31.47 32.9 31.27 KM Plot
THCA rs73360629 chr7:64259113 G/A 0.000141 502 31.47 33.2 31.27 KM Plot
THCA rs73389584 chr10:131944335 G/A 1.16E-5 503 31.47 32.37 27.18 KM Plot
THCA rs73389601 chr10:131954511 G/A 1.18E-5 502 31.47 32.9 27.18 KM Plot
THCA rs73391530 chr10:131968213 G/A 1.22E-5 502 31.47 32.37 27.18 KM Plot
THCA rs73391534 chr10:131968889 C/T 1.22E-5 502 31.47 32.37 27.18 KM Plot
THCA rs73507215 chr19:9887312 C/T 4.81E-6 498 31.45 33.22 32.9 KM Plot
THCA rs73509318 chr19:9924037 G/A 5.3E-6 495 31.43 33.22 32.9 KM Plot
THCA rs73550455 chr6:133096633 A/G 1.68E-5 497 31.42 35.9 27.15 KM Plot
THCA rs73554431 chr6:133129922 T/G 4.0E-5 503 31.47 32.43 30.78 KM Plot
THCA rs73554461 chr6:133139087 T/G 0 502 31.47 33.7 29.05 KM Plot
THCA rs73577727 chr10:538317 G/A 8.9E-5 499 31.03 41.17 29.25 KM Plot
THCA rs73589615 chr14:24713179 C/T 6.56E-12 494 31.47 33.63 12.87 KM Plot
THCA rs7359702 chr17:42485713 C/T 7.86E-5 503 31.47 32.9 53.23 KM Plot
THCA rs73659752 chr8:5032037 G/T 2.06E-5 498 31.47 35.13 8.9 KM Plot